1. Tao Y, Friedman C, Lussier YA. Visualizing information across multidimensional post-genomic structured and textual databases. Bioinformatics 2005; 21(8):1659-67.

2. Tao Y, Zhou L, Cimino JJ, Chen ES, Lussier YA, Hripcsak G, Friedman C. Terminology Model Discovery Using Natural Language Processing and Visualization Techniques. Journal of Biomedical Informatics 2005 Dec 14, [Epub ahead of print].

3. Tulipano KP, Tao Y, Zanzonico P, Kolbert K, Millar WS, Xu H, Yu H, Chen L, Lussier YA, Friedman C. Natural Language Processing and Visualization in the Molecular ImagingDomain. (Submitted to Bioinformatics)

4. Tao Y, Patel C, Friedman C, Lussier YA. OWL-based Interoperation of Clinical and Genetic Phenotypes anchored with the Phenotypes Attribute Ontology of the GO Consortium. (Manuscript in preparation for the Journal of Biomedical Informatics).

5. Tao Y, Patel C, Friedman C, Lussier YA. PIE: A Phenotype Interface Engine for bootstrapping PATO Knowledge bases. (Manuscript in preparation for the Journal of Biomedical Informatics).

6. Tao Y, Friedman C, Lussier YA. Prediction of Novel Human Gene Annotations by Mining Semantics of Gene Ontology. (Manuscript in preparation)

Invited review

7. Tao Y, Liu Y, Friedman C, Lussier YA. The Use of Information Visualization Techniques in Bioinformatics during Postgenomic Era. Drug Discovery Today: BIOSILICO 2004;2(6):237-245.

Conference paper and presentation

8. Tao Y, Mendonca EA, Lussier YA. A tool for abstracting relevant classes of concepts: the Common Ancestry Summarizer. Medinfo 2004;11(Pt 1):449-53.

9. Tao Y, Wang D, Shortliffe EH, Lussier YA. Extended attributes of event monitor systems for criteria-based notification modalities. Proc AMIA Symp 2002:762-6.

Conference abstracts

10. Tulipano K, Tao Y, Zanzonico P, Kolbert K, Lussier YA, Friedman C. Natural Language Processing in the Molecular Imaging Domain. AMIA Annu Symp Proc 2005:1143.

11. Franklin DM, Tao Y, Malhotra S. Improving Patient Compliance with Best Practices Guidelines: A Web based Automated and Personalized Reminders System. AMIA Annu Symp Proc 2005:939.

12. Tulipano PK, Tao Y, Zanzanico P, Kolbert K, Lussier YA, Friedman C.A Molecular Imaging Knowledge Base Using Automated Information Extraction Methods. The Third Annual Meeting of the Society for Molecular Imaging, September 9-12, 2004, St. Louis, Missouri.

13. Tao Y, Mendonca EA, Lussier YA. A "systematics" tool for medical terminologies. AMIA Annu Symp Proc 2003:1028.