Ivan Iossifov • Publications

Publications

Iossifov, I., Rodriguez-Esteban, R., Mayzus, I., & Rzhetsky, A. A Peek at the Known Portion of the Human Molecular Network with the Help of an Automated Information Extraction System. (2008) (in preparation)

Liu, J., Ghanim, M., Xue, L., Brown, C. D., Iossifov, I., Angeletti, C., Hua, S., Nègre, N., Ludwig, M., Robert L. Camp, Perera-Alberto, M., Rimm, D. L., Xu, T., Rzhetsky, A., & White, K. P. Integrated genomic analysis of the Drosophila segmentation network leads to identification of a highly specific biomarker for human kidney cancer. (2008) (submitted)

Iossifov, I., Zheng, T., Baron, M., Gilliam, T. C., & Rzhetsky, A. Genetic-linkage Mapping of Complex Hereditary Disorders to a Whole-genome Molecular-interaction Network. (2008) Genome Research PubMed | Read the paper

Murat Cokol, Ivan Iossifov, Raul Rodriguez-Esteban, and Andrey Rzhetsky How many scientific papers should be retracted? (2007) EMBO reports 8: 422–3 PubMed | Read the paper

Rodriguez-Esteban, R., Iossifov, I., & Rzhetsky, A. Imitating manual curation of text-mined facts in biomedicine. (2006) PLoS Comput Biol. 2: e118 PubMed | Read the paper

Rzhetsky, A., Iossifov, I., Loh, J.M., & White, K.P. Microparadigms: chains of collective reasoning in publications about molecular interactions. (2006) PNAS 103: 4940–5 PubMed | Read the paper

Cheng, R., Juo, S.H., Loth, J.E., Nee, J., Iossifov, I., Blumenthal, R., Sharpe, L., Kanyas, K., Lerer, B., Lilliston, B., Smith, M., Trautman, K., Gilliam, T.C., Endicott, J. & Baron, M. Genome-wide linkage scan in a large bipolar disorder sample from the National Institute of Mental Health genetics initiative suggests putative loci for bipolar disorder, psychosis, suicide, and panic disorder. (2006) Mol Psychiatry 11: 252–60 PubMed | Read the paper

Cokol, M., Iossifov, I., Weinreb, C., & Rzhetsky, A. Emergent behavior of growing knowledge about molecular interactions. (2005) Nat Biotechnol. 23: 1243–7 PubMed | Read the paper

Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboué, P.A., Weng, W., Wilbur, W.J., Hatzivassiloglou, V., & Friedman, C. GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. (2005) Book chapter in “Databasing the Brain: From Data to Knowledge (Neuroinformatics)”, Koslow and Subramaniam (Eds).

Iossifov, I., Krauthammer, M., Friedman, C., Hatzivassiloglou, V., Bader, J.S., White, K.P., & Rzhetsky, A. Probabilistic pathway inference from noisy data sources. (2004) Bioinformatics 22: 1205–13 PubMed | Read the paper

Rzhetsky, A., Iossifov, I., Koike, T., Krauthammer, M., Kra, P., Morris, M., Yu, H., Duboué, P.A., Weng, W., Wilbur, W.J., Hatzivassiloglou, V., & Friedman, C. GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data. (2004) J Biomed Inform. 37: 43–53 PubMed | Read the paper

Krauthammer, M., Kra, P., Iossifov, I., Gomez, S., Hripcsak, G., Hatzivassiloglou, V., Friedman, C., & Rzhetsky, A. Of truth and pathways: Chasing bits of information through myriads of articles. (2002) Bioinformatics 18: S249–57 PubMed | Read the paper

Hong, Y., Hatzivassiloglou, V., Friedman, C., Iossifov, I., & Rzhetsky, A. A rule-based approach for automatically identifying gene and protein names in MEDLINE abstracts. (2002) ISMB, Edmonton Poster 240A Read the poster abstract.